Concept attribute labeling and context-aware named entity recognition in electronic health records
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Date
2020Les auteurs
Pomares-Quimbaya, AlexandraGonzález, Rafael A.
Muñoz, Óscar
Garcia-Pena, A.A.
Daza Rodríguez, Julián Camilo
Sierra Múnera, Alejandro
Labbé, Cyril
Éditeur
IGI Global
Auteur(s) d'entreprise
Pontificia Universidad Javeriana. Facultad de Medicina. Departamento de Medicina Interna. Cardiología
Pontificia Universidad Javeriana. Facultad de Medicina. Departamento de Medicina Interna. Medicina Interna
Type
Capítulo de libro
ISBN
9781799812043 / 9781799812050 (Electrónico)
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Abstrait
Extracting valuable knowledge from Electronic Health Records (EHR) represents a challenging task due to the presence of both structured and unstructured data, including codified fields, images and test results. Narrative text in particular contains a variety of notes which are diverse in language and detail, as well as being full of ad hoc terminology, including acronyms and jargon, which is especially challenging in non-English EHR, where there is a dearth of annotated corpora or trained case sets. This paper proposes an approach for NER and concept attribute labeling for EHR that takes into consideration the contextual words around the entity of interest to determine its sense. The approach proposes a composition method of three different NER methods, together with the analysis of the context (neighboring words) using an ensemble classification model. This contributes to disambiguate NER, as well as labeling the concept as confirmed, negated, speculative, pending or antecedent. Results show an improvement of the recall and a limited impact on precision for the NER process.
Origine
Data Analytics in Medicine: Concepts, Methodologies, Tools, and Applications (2020)
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